python_topaz.in

#!/usr/bin/env bash

print_error() {
echo "
---------------------------------- PYTHON ERROR ---------------------------------
   Has RELION been provided a Python interpreter with the correct environment?
   The interpreter can be passed to RELION either during Cmake configuration by
     using the Cmake flag -DPYTHON_EXE_PATH=<path/to/python/interpreter>.
---------------------------------------------------------------------------------

  Using python executable: $1
"
}

# Set the Python executable path
python_executable="@PYTHON_EXE_PATH@"

# Check if the python executable exists
if [ ! -x "$python_executable" ]; then
    # Check for default python executable
    python_executable=$(command -v python)

    if [ -z "$python_executable" ]; then
        print_error "$python_executable"
        exit 1
    fi
fi

# Run the Python script with forwarded arguments
"$python_executable" -c "import re, sys; from topaz.main import main; sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0]); sys.exit(main())" "$@"

# Check the return status of the python command
if [ $? -ne 0 ]; then
    print_error "$python_executable"
    exit 2
fi

# Exit
exit 0