plaid/NAMESPACE at main · bigomics/plaid · GitHub

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# Generated by roxygen2: do not edit by hand

export(colranks)
export(dualGSEA)
export(gmt2mat)
export(gset.rankcor)
export(mat2gmt)
export(normalize_medians)
export(plaid)
export(read.gmt)
export(replaid.aucell)
export(replaid.gsva)
export(replaid.scse)
export(replaid.sing)
export(replaid.ssgsea)
export(replaid.ucell)
export(write.gmt)
importFrom(BiocSet,es_elementset)
importFrom(Matrix,Diagonal)
importFrom(Matrix,Matrix)
importFrom(Matrix,colScale)
importFrom(Matrix,colSums)
importFrom(Matrix,crossprod)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Matrix,t)
importFrom(Matrix,which)
importFrom(MatrixGenerics,colRanks)
importFrom(MatrixGenerics,colVars)
importFrom(MatrixGenerics,rowSds)
importFrom(Rfast,ttests)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assayNames)
importFrom(matrixStats,colMedians)
importFrom(methods,as)
importFrom(methods,is)
importFrom(parallel,mclapply)
importFrom(qlcMatrix,corSparse)
importFrom(stats,ecdf)
importFrom(stats,p.adjust)
importFrom(stats,pchisq)
importFrom(stats,pnorm)
importFrom(stats,pt)
importFrom(stats,qnorm)
importFrom(stats,var)
importFrom(utils,head)
importFrom(utils,read.csv)