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feat: Implement explicit Tau-Leaping Simulator with Mockito unit tests

enhancement

Status: Open (in progress).

draeger-lab/SBSCLnumber 111

#111 In draeger-lab/SBSCL;

· dyrpsf opened on Apr 20, 2026

Refactor: Migrate from JUL to SLF4J API in SBMLinterpreter

enhancement

Status: Open (in progress).

draeger-lab/SBSCLnumber 110

#110 In draeger-lab/SBSCL;

· dyrpsf opened on Apr 18, 2026

Refactor: Integrate FERN with native SBSCL SBMLinterpreter (Resolves #55)

enhancement

stochastic-simulation

Status: Open (in progress).

draeger-lab/SBSCLnumber 109

#109 In draeger-lab/SBSCL;

· dyrpsf opened on Apr 13, 2026

Fix #39: Resolve 25-minute stochastic test hang using deterministic Random seeding

enhancement

Status: Open (in progress).

draeger-lab/SBSCLnumber 108

#108 In draeger-lab/SBSCL;

· dyrpsf opened on Mar 27, 2026

WIP: Scaffold Python/Docker CLI architecture for BioSimulators curation (#68)

enhancement

Status: Open (in progress).

draeger-lab/SBSCLnumber 106

#106 In draeger-lab/SBSCL;

· dyrpsf opened on Mar 19, 2026

Use correct time in event triggers and re-enable SBML time-based event tests

bug

Status: Open (in progress).

draeger-lab/SBSCLnumber 104

#104 In draeger-lab/SBSCL;

· dyrpsf opened on Feb 26, 2026

Respect delay in rateOf for rate-rule variables and re-enable SBML Test Suite cases

enhancement

Status: Open (in progress).

draeger-lab/SBSCLnumber 103

#103 In draeger-lab/SBSCL;

· dyrpsf opened on Feb 9, 2026

Add basic FROG report generation for FBA models

enhancement

sbml-fbcSBML models with FBC extensionSBML models with FBC extension

Status: Open (in progress).

draeger-lab/SBSCLnumber 102

#102 In draeger-lab/SBSCL;

· dyrpsf opened on Feb 5, 2026

Align ODE dependencies: add Commons Math 3.x alongside 2.x (#92)

on holdPaused until a prerequisite is completedPaused until a prerequisite is completed

Status: Open (in progress).

draeger-lab/SBSCLnumber 98

#98 In draeger-lab/SBSCL;

· dyrpsf opened on Jan 6, 2026

Raise Java baseline to 17 and clean XML parsers for JDK 22+

on holdPaused until a prerequisite is completedPaused until a prerequisite is completed

Status: Open (in progress).

draeger-lab/SBSCLnumber 97

#97 In draeger-lab/SBSCL;

· dyrpsf opened on Jan 5, 2026

Fix misinterpretation of function arguments with parameters (#45)

Status: Open (in progress).

draeger-lab/SBSCLnumber 96

#96 In draeger-lab/SBSCL;

· dyrpsf opened on Jan 4, 2026