Documentation Generation Index _static: Contains images, css, js for Sphinx to look at _templates: Contains html layout for custom Sphinx design build: Contains the generated documentation devel: Contains *.rst files for the Developer's Guide examples: DIPY application showcases. Add any tutorial here examples_built: Keep it empty. Only for example generation releases_notes: Contains all API changes / PRs, issues resolved for a specific release sphinxext: Sphinx custom plugins theory: Diffusion theory + FAQ files tools: Scripts to generate some parts of the documentation, like the API Doc generation steps: Installing requirements $ pip install -U -r doc-requirements.txt Generate all the Documentation Under Linux and OSX $ make -C . clean && make -C . html Under Windows $ ./make.bat clean $ ./make.bat html