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slamseq_lint.md

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Nextflow lint results

  • Generated: 2026-01-16T10:29:50.939466674Z
  • Nextflow version: 25.12.0-edge
  • Summary: 17 errors

❌ Errors

  • Error: conf/base.config:14:12: check_max is not defined

      cpus = { check_max( 1 * task.attempt, 'cpus' ) }
           ^^^^^^^^^

  • Error: conf/base.config:15:14: check_max is not defined

      memory = { check_max( 8.GB * task.attempt, 'memory' ) }
             ^^^^^^^^^

  • Error: conf/base.config:16:12: check_max is not defined

      time = { check_max( 2.h * task.attempt, 'time' ) }
           ^^^^^^^^^

  • Error: conf/base.config:24:16: check_max is not defined

        memory = { check_max( 10.GB * task.attempt, 'memory' ) }
               ^^^^^^^^^

  • Error: conf/base.config:25:14: check_max is not defined

        time = { check_max( 8.h * task.attempt, 'time' ) }
             ^^^^^^^^^

  • Error: conf/base.config:29:14: check_max is not defined

        cpus = { check_max( 4 * task.attempt, 'cpus' ) }
             ^^^^^^^^^

  • Error: conf/base.config:30:16: check_max is not defined

        memory = { check_max( 10.GB * task.attempt, 'memory' ) }
               ^^^^^^^^^

  • Error: conf/base.config:31:14: check_max is not defined

        time = { check_max( 2.h * task.attempt, 'time' ) }
             ^^^^^^^^^

  • Error: conf/base.config:34:14: check_max is not defined

        cpus = { check_max( 14 * task.attempt, 'cpus' ) }
             ^^^^^^^^^

  • Error: conf/base.config:35:16: check_max is not defined

        memory = { check_max( 30.GB * task.attempt, 'memory' ) }
               ^^^^^^^^^

  • Error: conf/base.config:36:14: check_max is not defined

        time = { check_max( 8.h * task.attempt, 'time' ) }
             ^^^^^^^^^

  • Error: conf/base.config:40:16: check_max is not defined

        memory = { check_max( 10.GB * task.attempt, 'memory' ) }
               ^^^^^^^^^

  • Error: conf/base.config:41:14: check_max is not defined

        time = { check_max( 8.h * task.attempt, 'time' ) }
             ^^^^^^^^^

  • Error: conf/base.config:45:16: check_max is not defined

        memory = { check_max( 1.GB * task.attempt, 'memory' ) }
               ^^^^^^^^^

  • Error: conf/base.config:46:14: check_max is not defined

        time = { check_max( 1.h * task.attempt, 'time' ) }
             ^^^^^^^^^

  • Error: main.nf:98:24: Unexpected input: 'from'

                file fasta from fastaGunzipChannel
                       ^

  • Error: nextflow.config:69:3: Unexpected input: 'includeConfig'

      includeConfig "${params.custom_config_base}/nfcore_custom.config"
  ^