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Commits on Jun 23, 2026

• fix(bench): update ops path to /hpc/projects/icd.fast.ops (#565)

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  talonchandler

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Commits on May 28, 2026

• feat(zernike,phantoms): SeidelPupil + ring-bead phantoms (#561)

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  talonchandler

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Commits on May 8, 2026

• Shift-variant fluorescence simulation, Zernike recovery, and bench cases (#560)

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  talonchandler

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  f377a43

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• Tile Stitch Engine (#559)

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  srivarra

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  talonchandler

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  3dc2568

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Commits on Apr 29, 2026

• Use ProcessPoolExecutor with spawn for apply-inv-tf workers (#558)

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  ieivanov

  and

  claude

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  507a8af

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Commits on Apr 28, 2026

• Update iohub to 0.3.4 (#557)

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  ieivanov

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  8f19166

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• Reference checks for benchmark regression tracking (#553)

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  talonchandler

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  51b16b3

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Commits on Apr 27, 2026

• Update AQLM demo notebooks (#556)

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  talonchandler

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  34c4dbe

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Commits on Apr 24, 2026

• Defer chunk/shard choice to iohub (#555)

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  ieivanov

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  claude

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  77e6be7

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• Replace create_empty_hcs_zarr with iohub's create_empty_plate (#554)

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  ieivanov

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  claude

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  c27b97b

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Commits on Apr 20, 2026

• Namespace reconstruction settings by output channel names (#547)

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  talonchandler

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  d619ae3

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• Warn on pixel size mismatch and add `--write-config-scale-to-output` flag (#546)

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  talonchandler

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  a0e2d3c

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• Add benchmarking suite (#551)

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  talonchandler

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Commits on Apr 1, 2026

• Fix dynamic versioning pattern to match unversioned tags (#548)

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  talonchandler

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  e7c6e35

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• Optimization infrastructure: pluggable backends, losses, batched GPU processing (#531)

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  talonchandler

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  9bc1f17

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• Loosen iohub dependency to >=0.3.0a6,<0.4 (#536)

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  talonchandler

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  cadc965

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Commits on Mar 28, 2026

• iohub dependency (#543)

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  ieivanov

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Commits on Mar 9, 2026

• Reconstruction optimization and GPU support (#532)

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Commits on Mar 6, 2026

• Parameter optimization for phase and fluorescence reconstructions (#525)

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  talonchandler

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  srivarra

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  6eaf90d

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Commits on Mar 3, 2026

• Refactor: add `xarray` API layer and clean up CLI layer (#520)

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  talonchandler

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  185d5dd

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Commits on Feb 13, 2026

• Batched focused slice (#522)

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  edyoshikun

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  talonchandler

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  6c25cbb

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Commits on Feb 10, 2026

• Support OME-Zarr v0.5 (Zarr v3) datasets (#519)

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  talonchandler

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  46d87df

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Commits on Feb 3, 2026

• Constrain `PyQt6>=6.5,<6.8` for older linux systems (#517)

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  talonchandler

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  87746cd

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• Hide acquisition tab (#493)

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  talonchandler

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Commits on Jan 30, 2026

• Update WaveOrder logo (#516)

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  talonchandler

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  0030aad

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Commits on Jan 29, 2026

• Update and test recon tab for pydantic v2 (#514)

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  talonchandler

  and

  srivarra

  authored
  e769ea9

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• Backwards compatible stats from `focus_from_transverse_band` (#512)

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  talonchandler

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  89db3bc

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Commits on Jan 27, 2026

• Run examples CI (#513)

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  talonchandler

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  b0565fb

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• Non-integer focus support (#473)

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  talonchandler

  and

  claude

  authored
  a315d06

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• Fix 3D phase unit consistency (#511)

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  talonchandler

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  ad4dd98

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Commits on Jan 26, 2026

• Add dependency license details (#504)

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  talonchandler

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  ff9919e

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Commits on Jan 24, 2026

• Fix FileNotFoundError in get_reconstruction_output_metadata (#510)

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  talonchandler

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  claude

  authored
  767c5f0

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Commits on Jan 22, 2026

• Update `is_single_position_store` to catch `FileNotFoundError` (#509)

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  talonchandler

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  2bde904

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• Updated to Pydantic V2 Models (#508)

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  srivarra

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  aa035ba

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Commits on Nov 8, 2025

• demos for AQLM 2025 (#446)

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  mattersoflight

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  talonchandler

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  5384c90

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