Improving JPA pom.xml as part of overall JPA refactoring (helidon-io#6508)

Signed-off-by: Laird Nelson <laird.nelson@oracle.com>

Author: ljnelson

dependencies/pom.xml

@@ -80,6 +80,7 @@
         <version.lib.jakarta.transaction-api>2.0.0</version.lib.jakarta.transaction-api>
         <version.lib.jakarta.validation-api>3.0.0</version.lib.jakarta.validation-api>
         <version.lib.jakarta.websockets-api>2.0.0</version.lib.jakarta.websockets-api>
+        <!-- Check Hibernate when upgrading to ensure its supplied jaxb-runtime is compatible. -->
         <version.lib.jakarta.xml.bind-api>3.0.1</version.lib.jakarta.xml.bind-api>
         <version.lib.jandex>2.4.3.Final</version.lib.jandex>
         <version.lib.jaxb-core>3.0.2</version.lib.jaxb-core>
@@ -263,21 +264,42 @@
                 <artifactId>opentracing-tracerresolver</artifactId>
                 <version>${version.lib.opentracing.tracerresolver}</version>
             </dependency>
+            <!--
+                "Jakarta XML Binding API". (See
+                https://github.com/jakartaee/jaxb-api/blob/d8a68e76a5391cb2462f540c9e4c5c81d0a91942/jaxb-api/pom.xml#L23-L25)
+            -->
             <dependency>
                 <groupId>jakarta.xml.bind</groupId>
                 <artifactId>jakarta.xml.bind-api</artifactId>
                 <version>${version.lib.jakarta.xml.bind-api}</version>
             </dependency>
+            <!--
+                "Old JAXB Core". (See
+                https://github.com/eclipse-ee4j/jaxb-ri/blob/1120e83b8bac6dfd1636e19269a36a8ccaad94e4/jaxb-ri/bundles/core/pom.xml#L25-L30.)
+            -->
             <dependency>
                 <groupId>com.sun.xml.bind</groupId>
                 <artifactId>jaxb-core</artifactId>
                 <version>${version.lib.jaxb-core}</version>
             </dependency>
+            <!--
+                "Old JAXB Runtime". (See
+                https://github.com/eclipse-ee4j/jaxb-ri/blob/1120e83b8bac6dfd1636e19269a36a8ccaad94e4/jaxb-ri/bundles/runtime/pom.xml#L25-L30.)
+            -->
             <dependency>
                 <groupId>com.sun.xml.bind</groupId>
                 <artifactId>jaxb-impl</artifactId>
                 <version>${version.lib.jaxb-impl}</version>
             </dependency>
+            <!--
+                "JAXB Runtime"/"JAXB (JSR 222) Reference Implementation". (See
+                https://github.com/eclipse-ee4j/jaxb-ri/blob/1120e83b8bac6dfd1636e19269a36a8ccaad94e4/jaxb-ri/runtime/impl/pom.xml#L25-L30.)
+            -->
+            <dependency>
+                <groupId>org.glassfish.jaxb</groupId>
+                <artifactId>jaxb-runtime</artifactId>
+                <version>${version.lib.jaxb-runtime}</version>
+            </dependency>
             <dependency>
                 <groupId>jakarta.ws.rs</groupId>
                 <artifactId>jakarta.ws.rs-api</artifactId>

integrations/cdi/jpa-cdi/etc/spotbugs/exclude.xml

@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!--
-    Copyright (c) 2019, 2021 Oracle and/or its affiliates.
+    Copyright (c) 2019, 2023 Oracle and/or its affiliates.
 
     Licensed under the Apache License, Version 2.0 (the "License");
     you may not use this file except in compliance with the License.
@@ -31,30 +31,4 @@
         <Class name="io.helidon.integrations.cdi.jpa.DelegatingTypedQuery"/>
         <Bug pattern="RV_RETURN_VALUE_IGNORED_NO_SIDE_EFFECT"/>
     </Match>
-
-    <!-- These are delegating classes. User input validation would need to occur upstream -->
-    <Match>
-        <Class name="io.helidon.integrations.cdi.jpa.DelegatingConnection"/>
-        <Bug pattern="EXTERNAL_CONFIG_CONTROL"/>
-    </Match>
-    <Match>
-        <Class name="io.helidon.integrations.cdi.jpa.DelegatingConnection"/>
-        <Bug pattern="SQL_INJECTION_JDBC"/>
-    </Match>
-    <Match>
-        <Class name="io.helidon.integrations.cdi.jpa.DelegatingEntityManager"/>
-        <Bug pattern="SQL_INJECTION_JDBC"/>
-    </Match>
-    <Match>
-        <Class name="io.helidon.integrations.cdi.jpa.JpaTransactionScopedEntityManager"/>
-        <Bug pattern="SQL_INJECTION_JPA"/>
-    </Match>
-    <Match>
-        <Class name="io.helidon.integrations.cdi.jpa.NonTransactionalEntityManager"/>
-        <Bug pattern="SQL_INJECTION_JPA"/>
-    </Match>
-    <Match>
-        <Class name="io.helidon.integrations.cdi.jpa.DelegatingEntityManager"/>
-        <Bug pattern="SQL_INJECTION_JPA"/>
-    </Match>
 </FindBugsFilter>