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Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
[WIP] Download full text pdf and supplemental materials for each PubMed IDs.
A Python package to download full article PDFs from OA publications
Batch download articles based on PMID (Pubmed ID)
Python code for searching PubMed using the Entrez API.
Access to the PANTHER Gene Ontology database via REST API using Python
Download biological databas, extract database identifier and entrez gene identifier, insert in a mongo database
Retrieve PubMed article information to create citations using NCBI's Entrez (API)
A Rust wrapper around the Entrez API. Helps you access the Entrez API using idiomatic Rust. It also provides tools to parse the XML results from Entrez.
A simple Python interface to the NCBI databases (Entrez).
Download files from NCBI Entrez by accession
Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.
Biomni: a general-purpose biomedical AI agent
Backend library for conversational AI in biomedicine
Build a chatgpt chatbot for your website using LangChain, Supabase, Typescript, Openai, and Next.js.
A full-stack LLM-powered chatbot designed for bioscience and clinical research queries — from pathway analysis to molecular Q&A.
Chat with a PDF-enabled bot: Extract text from PDFs, segment it, and chat with a responsive AI – all within an intuitive Streamlit interface.
The Chat Bot Web Application is a web-based interactive chatbot that utilizes LLMs and Langchain technology to interact with documents and data managed on the Admin Dashboard (https://github.com/Ma…
Developed a web app using LLM models, Langchain, and chatbots for PDF interactions. Users upload PDFs and ask questions, receiving instant chatbot responses for efficient content retrieval.
GUI for ChatGPT API and many LLMs. Supports agents, file-based QA, GPT finetuning and query with web search. All with a neat UI.
SCSA: cell type annotation for single-cell RNA-seq data
Cell marker identification and evaluation pipeline in single cell transcriptomes.
Identify cell type based on cell markers for single cell squencing