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Pull requests: draeger-lab/SBSCL

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Pull requests list

Align ODE dependencies: add Commons Math 3.x alongside 2.x (#92) on hold Paused until a prerequisite is completed
#98 opened Jan 6, 2026 by dyrpsf Contributor Loading…
1
@dyrpsf @xts-Michi
2 👍 1
WIP: Scaffold Python/Docker CLI architecture for BioSimulators curation (#68) enhancement
#106 opened Mar 19, 2026 by dyrpsf Contributor Loading…
1
@dyrpsf
2
Respect delay in rateOf for rate-rule variables and re-enable SBML Test Suite cases enhancement
#103 opened Feb 9, 2026 by dyrpsf Contributor Loading…
1
@dyrpsf
13
Add basic FROG report generation for FBA models enhancement sbml-fbc SBML models with FBC extension
#102 opened Feb 5, 2026 by dyrpsf Contributor Loading…
1
@dyrpsf
10
Use correct time in event triggers and re-enable SBML time-based event tests bug
#104 opened Feb 26, 2026 by dyrpsf Contributor Loading…
1
@dyrpsf
6
Raise Java baseline to 17 and clean XML parsers for JDK 22+ on hold Paused until a prerequisite is completed
#97 opened Jan 5, 2026 by dyrpsf Contributor Loading…
@dyrpsf @xts-Michi
8
Fix misinterpretation of function arguments with parameters (#45)
#96 opened Jan 4, 2026 by dyrpsf Contributor Loading…
@dyrpsf
4
Add OptSolvX adapter, demo, tests, and docs (initial SBSCL integration) in progress Work in progress
#88 opened Aug 10, 2025 by xts-Michi Collaborator Loading…
1
@xts-Michi
2
Refactor: Migrate from JUL to SLF4J API in SBMLinterpreter enhancement
#110 opened Apr 18, 2026 by dyrpsf Contributor Loading…
@dyrpsf
Feat: set OptSolvX as default LP backend; add SBML-FBC→LP bridge in progress Work in progress
#90 opened Aug 21, 2025 by xts-Michi Collaborator Loading…
1
@xts-Michi
5
Fix #39: Resolve 25-minute stochastic test hang using deterministic Random seeding enhancement
#108 opened Mar 27, 2026 by dyrpsf Contributor Loading…
1
@dyrpsf
2
Refactor: Integrate FERN with native SBSCL SBMLinterpreter (Resolves #55) enhancement stochastic-simulation
#109 opened Apr 13, 2026 by dyrpsf Contributor Loading…
1
@dyrpsf
Bump org.jdom:jdom2 from 2.0.5 to 2.0.6.1 dependencies Pull requests that update a dependency file java Pull requests that update java code
#93 opened Sep 16, 2025 by dependabot Bot Loading…
@draeger
2
feat: Implement explicit Tau-Leaping Simulator with Mockito unit tests enhancement
#111 opened Apr 20, 2026 by dyrpsf Contributor Loading…
@dyrpsf
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