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Updated Sanger config for the new LSF queues#1130

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sanger_queues
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Updated Sanger config for the new LSF queues#1130
muffato wants to merge 1 commit into
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sanger_queues

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@muffato

@muffato muffato commented Jun 12, 2026

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The LSF queues at the Sanger are changing. The farm22 and tol22 now have different queue configurations, so I've moved the queue settings to the farm-specific files.

@muffato muffato self-assigned this Jun 12, 2026
@muffato

muffato commented Jun 12, 2026

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Why is the CI testing all config files ?

@muffato

muffato commented Jun 12, 2026

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I don't know what https://github.com/nf-core/configs/actions/runs/27430916781/job/81080792432?pr=1130 means

/home/runner/work/configs/configs/conf/sanger.config:32:9: `clustername` was assigned but not declared
 32 |     def clustername = "farm22"
    |         ^^^^^^^^^^^

/home/runner/work/configs/configs/conf/sanger.config:35:9: `clustername` was assigned but not declared
 35 |         clustername = ['/bin/bash', '-c', 'lsid | awk \'$0 ~ /^My clus
    |         ^^^^^^^^^^^

/home/runner/work/configs/configs/conf/sanger.config:37:103: `clustername` is not defined
 37 | ot run lsid to determine current cluster, defaulting to "+clustername)
    |                                                           ^^^^^^^^^^^

/home/runner/work/configs/configs/conf/sanger.config:40:9: `clustername` is not defined
 40 |     if (clustername == "tol22") {
    |         ^^^^^^^^^^^

/home/runner/work/configs/configs/conf/sanger.config:42:16: `clustername` is not defined
 42 |     } else if (clustername == "farm22") {
    |                ^^^^^^^^^^^

Is def clustername not declaring the variable ?

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