Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.

R Interface to Europe PMC RESTful Web Service

Open-source AI research assistant for VS Code + GitHub Copilot. Connects to PubMed, OpenAlex, Semantic Scholar, Europe PMC, CrossRef, and Zotero via MCP servers. Custom agents guide systematic reviews, academic writing, data analysis, and project management — all ICMJE-compliant with full audit trails.

🔬 Professional MCP server for biomedical literature research — 40 tools, multi-source search (PubMed, Europe PMC, CORE, OpenAlex), full-text access, citation networks, PICO analysis, and more

Information extraction from unstructured text to build a knowledge graph using techniques from traditional NLP to pre-trained transformers and LLMs for NER and Linking, and Relation Extraction.

A Java command-line tool and library to download and store publications with metadata by combining content from various online resources

QTLTableMiner++ tool for mining tables in scientific articles

Tool for visualization of research papers that have common accession numbers

Code associated with our 2018 review in Current Opinion in Systems Biology

Local research-only AI agent for evidence-grounded therapeutic target discovery with PubTator3, Open Targets, Neo4j, ChEMBL/RDKit, and FastAPI.

A minimal search interface to Europe PMC

📚 LitRadar — 生物医学文献追踪系统 | 鸿蒙PC纯原生 | PubMed + Europe PMC 直连 | 零后端 | ArkTS

NLP-powered tool to discover and classify biodiversity genomics publications using Europe PMC API

Python package for existence checks, metadata, linking, and conversion of scholarly identifiers (PMID, DOI, PMCID, arXiv, ORCID).